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Close-up of apple Greek yogurt muffins with cinnamon crumble, halved to show texture and filling.

Apple Cinnamon Greek Yogurt Muffins – Moist, Protein-Packed, and Perfect for Breakfast or Snack Time

Molly
These apple cinnamon Greek yogurt muffins are soft, moist, and naturally sweetened with maple syrup and juicy grated apples. Made with whole wheat flour, oats, and protein-packed Greek yogurt, they’re the perfect make-ahead breakfast or wholesome snack. Ideal for meal prep, back-to-school mornings, or cozy fall brunches.
Prep Time 10 minutes
Cook Time 22 minutes
Total Time 32 minutes
Course Breakfast, Dessert, Snack
Cuisine American, Healthy Comfort Food
Servings 12 muffins
Calories 165 kcal

Ingredients
  

  • Greek Yogurt 1 cup: Use plain, full-fat or low-fat. Adds creaminess and protein.
  • Eggs 2: Bind the batter together.
  • Maple Syrup ⅓ cup: Naturally sweetens and adds depth.
  • Grated Apple 1 large: Choose a sweeter variety like Fuji or Honeycrisp.
  • Whole Wheat Flour 1 cup: Adds fiber and a subtle nutty flavor.
  • Old-Fashioned Oats 1 cup: Gives the muffins structure and texture.
  • Baking Soda ½ tsp: Leavens the batter.
  • Ground Cinnamon 1½ tsp: Provides warm spice.
  • Salt ¼ tsp: Enhances all the flavors.
  • Vanilla Extract 1 tsp: Adds a bakery-style finish.

Instructions
 

  • Prep your oven and pan. Preheat oven to 350°F and line a 12-cup muffin tin with liners.
  • Mix wet ingredients. In a large bowl, whisk together Greek yogurt, eggs, maple syrup, grated apple, and vanilla.
  • Combine dry ingredients. In a separate bowl, stir together whole wheat flour, oats, cinnamon, baking soda, and salt.
  • Combine wet and dry. Add the dry ingredients to the wet mixture and stir until just combined.
  • Portion the batter. Divide evenly among muffin cups.
  • Bake. Bake for 20–22 minutes or until a toothpick comes out clean.
  • Cool and enjoy. Let cool in the pan for 5 minutes before transferring to a rack.

Notes

Secret Tips for the Best Apple Cinnamon Greek Yogurt Muffins

1. Use full-fat Greek yogurt for richness: If you want truly moist and protein-packed muffins, go for full-fat Greek yogurt. It adds a creamy texture and helps balance the tartness of the apples and warmth of the cinnamon.
2. Shred the apples for juicy flavor: Instead of dicing, grate the apples directly into the batter. This releases more juice, keeping the muffins ultra moist without weighing them down—perfect for a healthy breakfast muffin.
3. Don’t overmix the batter: Once your wet and dry ingredients are combined, stir gently until just incorporated. Overmixing leads to dense muffins, which defeats the light, fluffy texture you want in these cinnamon apple snacks.
4. Add a cinnamon oat topping for crunch: For a bakery-style finish, sprinkle a mix of oats, brown sugar, and cinnamon on top before baking. It gives your Greek yogurt muffins a golden crust and sweet bite.
5. Let them rest before eating: These apple cinnamon muffins actually taste better after cooling for about 30 minutes. The flavors meld, the texture settles, and the natural sweetness from the apples deepens.
6. Store them the smart way: To keep them moist, store in an airtight container at room temperature for 2 days or in the fridge for up to 5. For longer storage, these protein-packed muffins freeze beautifully—just wrap them individually.
7. Boost the protein even more: Sneak in a scoop of your favorite vanilla or unflavored protein powder if you're looking for a real breakfast power-up. Just reduce the flour slightly to keep the texture balanced.
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